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LOC103408620 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 [ Malus domestica (apple) ]

Gene ID: 103408620, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103408620
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103408620 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 4 NC_041792.1 (29221007..29223770, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 4 Unlocalized Scaffold (alt_haplotype1.MalDomGD1.0) NW_007545132.1 (3884181..3886758, complement)

Chromosome 4 - NC_041792.1Genomic Context describing neighboring genes Neighboring gene probable microtubule-binding protein TANGLED Neighboring gene mitogen-activated protein kinase kinase kinase NPK1-like Neighboring gene mitochondrial Rho GTPase 1-like Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041792.1 Reference ASM211411v1 Primary Assembly

    Range
    29221007..29223770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008347458.2 → XP_008345680.2  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

    Conserved Domains (1) summary
    cd02537
    Location:293 → 528
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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