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LOC103407421 hydroxyproline O-arabinosyltransferase 3-like [ Malus domestica (apple) ]

Gene ID: 103407421, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103407421
Gene description
hydroxyproline O-arabinosyltransferase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103407421 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 2 NC_041790.1 (34128556..34132846)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 2 Unlocalized Scaffold (alt_haplotype1.MalDomGD1.0) NW_007545086.1 (896031..900355, complement)

Chromosome 2 - NC_041790.1Genomic Context describing neighboring genes Neighboring gene protein ENHANCED DISEASE RESISTANCE 2-like Neighboring gene lon protease homolog 1, mitochondrial-like Neighboring gene NADPH:quinone oxidoreductase-like Neighboring gene cation/H(+) antiporter 15-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041790.1 Reference ASM211411v1 Primary Assembly

    Range
    34128556..34132846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008346358.3 → XP_008344580.2  hydroxyproline O-arabinosyltransferase 3-like

  2. XM_029095885.1 → XP_028951718.1  hydroxyproline O-arabinosyltransferase 3-like

RNA

  1. XR_524770.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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