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LOC103406148 probable beta-1,4-xylosyltransferase IRX9H [ Malus domestica (apple) ]

Gene ID: 103406148, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103406148
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103406148 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 8 NC_041796.1 (27263479..27266542, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 1 Unlocalized Scaffold (alt_haplotype1.MalDomGD1.0) NW_007545048.1 (352782..355832)

Chromosome 8 - NC_041796.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene symplekin-like Neighboring gene protein DETOXIFICATION 48-like Neighboring gene transfer RNA leucine (anticodon CAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041796.1 Reference ASM211411v1 Primary Assembly

    Range
    27263479..27266542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008345160.3 → XP_008343382.2  probable beta-1,4-xylosyltransferase IRX9H

    Conserved Domains (1) summary
    cd00218
    Location:157 → 386
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

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