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LOC103405629 callose synthase 5-like [ Malus domestica (apple) ]

Gene ID: 103405629, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103405629
Gene description
callose synthase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103405629 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
42
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 1 NC_041789.1 (2958217..2975117)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 17 NC_024255.1 (19132520..19149396)

Chromosome 1 - NC_041789.1Genomic Context describing neighboring genes Neighboring gene NAD(P)H-quinone oxidoreductase subunit O, chloroplastic Neighboring gene uncharacterized LOC103441428 Neighboring gene uncharacterized LOC103432242 Neighboring gene SWR1-complex protein 4-like Neighboring gene photosystem I reaction center subunit N, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: callose synthase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041789.1 Reference ASM211411v1 Primary Assembly

    Range
    2958217..2975117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029101004.1 → XP_028956837.1  LOW QUALITY PROTEIN: callose synthase 5-like

    UniProtKB/TrEMBL
    A0A498KNR0
    Conserved Domains (3) summary
    pfam02364
    Location:1040 → 1785
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:50 → 157
    Vta1; Vta1 like
    pfam14288
    Location:324 → 437
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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