U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103403342 probable beta-1,4-xylosyltransferase IRX14 [ Malus domestica (apple) ]

Gene ID: 103403342, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103403342
Gene description
probable beta-1,4-xylosyltransferase IRX14
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103403342 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 2 NC_041790.1 (15709505..15714485)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 2 NC_024240.1 (16831681..16836659)

Chromosome 2 - NC_041790.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114823005 Neighboring gene uncharacterized LOC114820820 Neighboring gene cysteine proteinase COT44-like Neighboring gene UPF0481 protein At3g47200

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX14

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041790.1 Reference ASM211411v1 Primary Assembly

    Range
    15709505..15714485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008342156.3 → XP_008340378.1  probable beta-1,4-xylosyltransferase IRX14

    UniProtKB/TrEMBL
    A0A498HZ05, A0A498KN57
    Conserved Domains (1) summary
    pfam03360
    Location:180 → 420
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases