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LOC103401560 callose synthase 3 [ Malus domestica (apple) ]

Gene ID: 103401560, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103401560
Gene description
callose synthase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
Also known as
cals1
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Genomic context

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See LOC103401560 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
44
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 11 NC_041799.1 (1288512..1305110, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 15 NC_024253.1 (27272411..27289029)

Chromosome 11 - NC_041799.1Genomic Context describing neighboring genes Neighboring gene protein SOGA3-like Neighboring gene callose synthase 9 Neighboring gene putative E3 ubiquitin-protein ligase LIN-1 Neighboring gene uncharacterized LOC114819821

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phloem cytochemical modification and gene expression following the recovery of apple plants from apple proliferation disease. Musetti R, et al. Phytopathology, 2010 Apr. PMID 20205543
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: callose synthase 3
Names
1,3-beta-glucan synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041799.1 Reference ASM211411v1 Primary Assembly

    Range
    1288512..1305110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008340275.3 → XP_008338497.2  LOW QUALITY PROTEIN: callose synthase 3

    UniProtKB/TrEMBL
    A0A498K8S4
    Conserved Domains (3) summary
    pfam02364
    Location:1058 → 1816
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:53 → 177
    Vta1; Vta1 like
    pfam14288
    Location:323 → 436
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases