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LOC103400602 callose synthase 12 [ Malus domestica (apple) ]

Gene ID: 103400602, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103400602
Gene description
callose synthase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103400602 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 9 NC_041797.1 (31776016..31782722, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 15 NC_024253.1 (12341051..12347266)

Chromosome 9 - NC_041797.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103424965 Neighboring gene two pore calcium channel protein 1-like Neighboring gene small nucleolar RNA J33 Neighboring gene protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5-like Neighboring gene 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041797.1 Reference ASM211411v1 Primary Assembly

    Range
    31776016..31782722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008339254.3 → XP_008337476.2  callose synthase 12

    UniProtKB/TrEMBL
    A0A498HH67
    Conserved Domains (2) summary
    pfam02364
    Location:869 → 1634
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:153 → 266
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases