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LOC103399979 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103399979, updated on 2-May-2024

Summary

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Gene symbol
LOC103399979
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like
See related
Ensembl:ENSCSEG00000003444
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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See LOC103399979 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 2 NC_024308.1 (16042997..16047327, complement)

Chromosome 2 - NC_024308.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103399977 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene epithelial cell transforming 2 Neighboring gene neuroligin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024308.1 Chromosome 2 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024308.1 Reference Cse_v1.0 Primary Assembly

    Range
    16042997..16047327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008338653.3 → XP_008336875.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A3P8USJ4
    Related
    ENSCSEP00000005332.1, ENSCSET00000005391.1
    Conserved Domains (1) summary
    cl21608
    Location:112 → 309
    Galactosyl_T; Galactosyltransferase

  2. XM_025066154.1 → XP_024921922.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A3P8USJ4
    Conserved Domains (1) summary
    cl21608
    Location:112 → 309
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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