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LOC103398020 torsin-1A-interacting protein 2-like [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103398020, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103398020
Gene description
torsin-1A-interacting protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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See LOC103398020 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 2 NC_024308.1 (9794016..9799720)

Chromosome 2 - NC_024308.1Genomic Context describing neighboring genes Neighboring gene growth hormone releasing hormone receptor, like Neighboring gene uncharacterized LOC107990269 Neighboring gene FYVE and coiled-coil domain autophagy adaptor 1a Neighboring gene chemokine XC receptor 1-like Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene uncharacterized LOC112486466 Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024308.1 Chromosome 2 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024308.1 Reference Cse_v1.0 Primary Assembly

    Range
    9794016..9799720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008336511.3 → XP_008334733.1  torsin-1A-interacting protein 2-like

    See identical proteins and their annotated locations for XP_008334733.1

    Conserved Domains (2) summary
    COG5271
    Location:21 → 251
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:286 → 498
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_008336502.3 → XP_008334724.1  torsin-1A-interacting protein 2-like

    See identical proteins and their annotated locations for XP_008334724.1

    Conserved Domains (2) summary
    COG5271
    Location:21 → 251
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:286 → 498
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

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