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galnt15 polypeptide N-acetylgalactosaminyltransferase 15 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103394133, updated on 22-Oct-2023

Summary

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Gene symbol
galnt15
Gene description
polypeptide N-acetylgalactosaminyltransferase 15
See related
Ensembl:ENSCSEG00000012069
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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See galnt15 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 18 NC_024324.1 (4832776..4837057, complement)

Chromosome 18 - NC_024324.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 5 Neighboring gene SATB homeobox 1a Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8 Neighboring gene glycoprotein (transmembrane) nmb Neighboring gene insulin-like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024324.1 Chromosome 18 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024324.1 Reference Cse_v1.0 Primary Assembly

    Range
    4832776..4837057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008331292.3 → XP_008329514.1  polypeptide N-acetylgalactosaminyltransferase 15

    UniProtKB/TrEMBL
    A0A3P8VZT5
    Related
    ENSCSEP00000018861.1, ENSCSET00000019095.1
    Conserved Domains (4) summary
    cd02510
    Location:188 → 489
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:503 → 639
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:502 → 637
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:185 → 416
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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Gene LinkOut

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