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ext1c exostoses (multiple) 1c [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103393992, updated on 11-Mar-2024

Summary

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Gene symbol
ext1c
Gene description
exostoses (multiple) 1c
See related
Ensembl:ENSCSEG00000010852
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
zebrafish all
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Genomic context

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See ext1c in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 18 NC_024324.1 (3363809..3427049, complement)

Chromosome 18 - NC_024324.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein PB18E9.04c-like Neighboring gene Mediator of RNA polymerase II transcription subunit 30-like Neighboring gene uncharacterized LOC103393994 Neighboring gene thiopurine S-methyltransferase Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024324.1 Chromosome 18 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1c-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024324.1 Reference Cse_v1.0 Primary Assembly

    Range
    3363809..3427049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025065234.1 → XP_024921002.1  exostosin-1c-like isoform X1

    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 748
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_008331124.3 → XP_008329346.1  exostosin-1c-like isoform X2

    UniProtKB/TrEMBL
    A0A3P8VUA0
    Related
    ENSCSEP00000016886.1, ENSCSET00000017100.1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 715
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases