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LOC103393434 xylosyltransferase 1-like [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103393434, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103393434
Gene description
xylosyltransferase 1-like
See related
Ensembl:ENSCSEG00000008700
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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See LOC103393434 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 17 NC_024323.1 (13143435..13158121, complement)

Chromosome 17 - NC_024323.1Genomic Context describing neighboring genes Neighboring gene MBT domain-containing protein 1-like Neighboring gene keratin, type I cytoskeletal 13-like Neighboring gene keratin, type I cytoskeletal 50 kDa-like Neighboring gene RAB40c, member RAS oncogene family Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024323.1 Chromosome 17 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024323.1 Reference Cse_v1.0 Primary Assembly

    Range
    13143435..13158121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017040477.2 → XP_016895966.1  xylosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A3P8VJZ1
    Conserved Domains (2) summary
    pfam02485
    Location:290 → 542
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:575 → 758
    Xylo_C; Xylosyltransferase C terminal

  2. XM_008330403.3 → XP_008328625.1  xylosyltransferase 1-like isoform X1

    See identical proteins and their annotated locations for XP_008328625.1

    UniProtKB/TrEMBL
    A0A3P8VJZ1
    Conserved Domains (2) summary
    pfam02485
    Location:290 → 542
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:575 → 758
    Xylo_C; Xylosyltransferase C terminal

  3. XM_025064593.1 → XP_024920361.1  xylosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A3P8VJZ1
    Related
    ENSCSEP00000013601.1, ENSCSET00000013760.1
    Conserved Domains (2) summary
    pfam12529
    Location:575 → 758
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:290 → 542
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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