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p3h2 prolyl 3-hydroxylase 2 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103392998, updated on 11-Mar-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
See related
Ensembl:ENSCSEG00000013736
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
leprel1
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 2 NC_024308.1 (1373888..1410896)

Chromosome 2 - NC_024308.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 50a Neighboring gene claudin-7-like Neighboring gene coiled-coil domain containing 181 Neighboring gene coproporphyrinogen oxidase Neighboring gene proline rich Gla (G-carboxyglutamic acid) 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024308.1 Chromosome 2 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2
Names
leprecan-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024308.1 Reference Cse_v1.0 Primary Assembly

    Range
    1373888..1410896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017039729.2 → XP_016895218.1  prolyl 3-hydroxylase 2 isoform X1

  2. XM_008329798.3 → XP_008328020.1  prolyl 3-hydroxylase 2 isoform X2

    UniProtKB/TrEMBL
    A0A3P8WAD2
    Related
    ENSCSEP00000021530.1, ENSCSET00000021807.1
    Conserved Domains (1) summary
    smart00702
    Location:452 → 650
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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