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polr3k polymerase (RNA) III (DNA directed) polypeptide K [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103392766, updated on 11-Mar-2024

Summary

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Gene symbol
polr3k
Gene description
polymerase (RNA) III (DNA directed) polypeptide K
See related
Ensembl:ENSCSEG00000010369
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See polr3k in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 17 NC_024323.1 (4354204..4355587, complement)

Chromosome 17 - NC_024323.1Genomic Context describing neighboring genes Neighboring gene mahogunin ring finger 1 Neighboring gene uncharacterized LOC107989863 Neighboring gene cell death-inducing p53 target 1 Neighboring gene small nuclear ribonucleoprotein 25 Neighboring gene myocardin related transcription factor Bb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024323.1 Chromosome 17 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in termination of RNA polymerase III transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC10
Names
RNA polymerase III subunit K
polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
polymerase (RNA) III subunit K

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024323.1 Reference Cse_v1.0 Primary Assembly

    Range
    4354204..4355587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008329483.3 → XP_008327705.1  DNA-directed RNA polymerase III subunit RPC10

    See identical proteins and their annotated locations for XP_008327705.1

    UniProtKB/TrEMBL
    A0A3P8VLF7
    Related
    ENSCSEP00000016113.1, ENSCSET00000016321.1
    Conserved Domains (2) summary
    COG1594
    Location:1 → 108
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10509
    Location:61 → 108
    Zn-ribbon_RPC11; C-terminal zinc ribbon domain of RPC11 subunit of RNA polymerase III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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