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galnt13 polypeptide N-acetylgalactosaminyltransferase 13 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103392191, updated on 18-Aug-2024

Summary

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Gene symbol
galnt13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSCSEG00000011271
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See galnt13 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 16 NC_024322.1 (12605667..12635871, complement)

Chromosome 16 - NC_024322.1Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 3a Neighboring gene uncharacterized LOC103392190 Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate a Neighboring gene PRP40 pre-mRNA processing factor 40 homolog A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024322.1 Chromosome 16 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024322.1 Reference Cse_v1.0 Primary Assembly

    Range
    12605667..12635871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008328744.3 → XP_008326966.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A3P8VTB6
    Related
    ENSCSEP00000017577.1, ENSCSET00000017795.1
    Conserved Domains (4) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 549
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:115 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  2. XM_025063885.1 → XP_024919653.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3P8VYW5
    Related
    ENSCSEP00000017590.1, ENSCSET00000017809.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_017040133.2 → XP_016895622.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X3

Nucleotide Protein
Heading Accession and Version

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