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galnt5 polypeptide N-acetylgalactosaminyltransferase 5 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103392186, updated on 11-Mar-2024

Summary

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Gene symbol
galnt5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
Ensembl:ENSCSEG00000011146
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See galnt5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 16 NC_024322.1 (12390988..12398928, complement)

Chromosome 16 - NC_024322.1Genomic Context describing neighboring genes Neighboring gene ermin Neighboring gene cytohesin 1 interacting protein Neighboring gene uncharacterized LOC103392182 Neighboring gene uncharacterized LOC107989804 Neighboring gene nuclear receptor subfamily 4, group A, member 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024322.1 Chromosome 16 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024322.1 Reference Cse_v1.0 Primary Assembly

    Range
    12390988..12398928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025063546.1 → XP_024919314.1  LOW QUALITY PROTEIN: polypeptide N-acetylgalactosaminyltransferase 5

    UniProtKB/TrEMBL
    A0A3P8VSZ7
    Related
    ENSCSEP00000017467.1, ENSCSET00000017686.1
    Conserved Domains (3) summary
    cd02510
    Location:357 → 660
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:670 → 789
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl26761
    Location:118 → 240
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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