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wdr3 WD repeat domain 3 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103392001, updated on 11-Mar-2024

Summary

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Gene symbol
wdr3
Gene description
WD repeat domain 3
See related
Ensembl:ENSCSEG00000009381
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See wdr3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 16 NC_024322.1 (9196144..9205670, complement)

Chromosome 16 - NC_024322.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103391998 Neighboring gene zona pellucida-like domain-containing protein 1 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene transfer RNA proline (anticodon AGG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024322.1 Chromosome 16 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024322.1 Reference Cse_v1.0 Primary Assembly

    Range
    9196144..9205670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008328517.2 → XP_008326739.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A3P8VH52, A0A3P8VK69
    Related
    ENSCSEP00000014623.1, ENSCSET00000014799.1
    Conserved Domains (5) summary
    COG2319
    Location:91 → 695
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:406 → 699
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:801 → 902
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:455 → 490
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:37 → 222
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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