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hs6st2 heparan sulfate 6-O-sulfotransferase 2 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103390844, updated on 11-Mar-2024

Summary

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Gene symbol
hs6st2
Gene description
heparan sulfate 6-O-sulfotransferase 2
See related
Ensembl:ENSCSEG00000005681
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
zebrafish all
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Genomic context

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See hs6st2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 15 NC_024321.1 (8731000..8733721, complement)

Chromosome 15 - NC_024321.1Genomic Context describing neighboring genes Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene muscleblind-like splicing regulator 3 Neighboring gene Transmembrane protein 179-like Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024321.1 Chromosome 15 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024321.1 Reference Cse_v1.0 Primary Assembly

    Range
    8731000..8733721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025063468.1 → XP_024919236.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:80 → 334
    Sulfotransfer_2; Sulfotransferase family

  2. XM_008326891.3 → XP_008325113.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A3P8V8W8
    Related
    ENSCSEP00000008875.1, ENSCSET00000008972.1
    Conserved Domains (1) summary
    pfam03567
    Location:103 → 368
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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