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LOC103388612 exostosin-1b [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103388612, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103388612
Gene description
exostosin-1b
See related
Ensembl:ENSCSEG00000009335
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
ext1
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Genomic context

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See LOC103388612 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 13 NC_024319.1 (11774621..11801448)

Chromosome 13 - NC_024319.1Genomic Context describing neighboring genes Neighboring gene NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase Neighboring gene WASH complex subunit 5 Neighboring gene double-strand-break repair protein rad21 homolog Neighboring gene eukaryotic translation initiation factor 3 subunit H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024319.1 Chromosome 13 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1b
Names
exostosin glycosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024319.1 Reference Cse_v1.0 Primary Assembly

    Range
    11774621..11801448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008323671.3 → XP_008321893.1  exostosin-1b

    UniProtKB/TrEMBL
    A0A3P8VJH7
    Related
    ENSCSEP00000014502.1, ENSCSET00000014676.1
    Conserved Domains (2) summary
    pfam03016
    Location:108 → 393
    Exostosin; Exostosin family
    pfam09258
    Location:477 → 718
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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