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colgalt1b collagen beta(1-O)galactosyltransferase 1b [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103384145, updated on 12-Sep-2024

Summary

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Gene symbol
colgalt1b
Gene description
collagen beta(1-O)galactosyltransferase 1b
See related
Ensembl:ENSCSEG00000013243
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
zebrafish all
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Genomic context

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See colgalt1b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 9 NC_024315.1 (15951392..15960398, complement)

Chromosome 9 - NC_024315.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L1-like Neighboring gene nucleoredoxin like 1 Neighboring gene CD97 antigen Neighboring gene basement membrane-specific heparan sulfate proteoglycan core protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024315.1 Chromosome 9 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024315.1 Reference Cse_v1.0 Primary Assembly

    Range
    15951392..15960398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008317547.3 → XP_008315769.1  procollagen galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3P8W2L4
    Related
    ENSCSEP00000020747.1, ENSCSET00000021008.1
    Conserved Domains (2) summary
    cd06532
    Location:334 → 517
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:47 → 161
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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