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LOC103382555 40S ribosomal protein S16 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103382555, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103382555
Gene description
40S ribosomal protein S16
See related
Ensembl:ENSCSEG00000004450
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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See LOC103382555 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 8 NC_024314.1 (17508337..17510004, complement)

Chromosome 8 - NC_024314.1Genomic Context describing neighboring genes Neighboring gene myogenic factor 5 Neighboring gene myogenic factor 6 Neighboring gene 40S ribosomal protein S16 Neighboring gene protein phosphatase 1, regulatory subunit 12A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024314.1 Chromosome 8 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024314.1 Reference Cse_v1.0 Primary Assembly

    Range
    17508337..17510004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008315384.2 → XP_008313606.1  40S ribosomal protein S16

    See identical proteins and their annotated locations for XP_008313606.1

    UniProtKB/TrEMBL
    A0A3P8UUP2
    Related
    ENSCSEP00000006894.1, ENSCSET00000006969.1
    Conserved Domains (1) summary
    PLN00210
    Location:6 → 146
    PLN00210; 40S ribosomal protein S16; Provisional
Nucleotide Protein
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