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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103382438, updated on 11-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSCSEG00000003289
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 8 NC_024314.1 (15645828..15660336, complement)

Chromosome 8 - NC_024314.1Genomic Context describing neighboring genes Neighboring gene podocalyxin-like Neighboring gene nuclear transcription factor Y, beta a Neighboring gene caprin family member 2 Neighboring gene importin 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024314.1 Chromosome 8 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024314.1 Reference Cse_v1.0 Primary Assembly

    Range
    15645828..15660336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008315242.3 → XP_008313464.1  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A3P8UWG6, A0A3P8UWH1
    Related
    ENSCSEP00000005101.1, ENSCSET00000005160.1
    Conserved Domains (8) summary
    COG0457
    Location:589 → 871
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:477 → 505
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:817 → 849
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:477 → 510
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:285 → 359
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:476 → 539
    TPR_11; TPR repeat
    pfam13428
    Location:683 → 720
    TPR_14; Tetratricopeptide repeat
    pfam13431
    Location:598 → 629
    TPR_17; Tetratricopeptide repeat

RNA

  1. XR_003050343.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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