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sgca sarcoglycan, alpha [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103381815, updated on 11-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSCSEG00000014094
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 8 NC_024314.1 (6950765..6966799)

Chromosome 8 - NC_024314.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 10 Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene putative all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024314.1 Chromosome 8 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024314.1 Reference Cse_v1.0 Primary Assembly

    Range
    6950765..6966799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008314362.3 → XP_008312584.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A3P8W909
    Related
    ENSCSEP00000022121.1, ENSCSET00000022400.1
    Conserved Domains (1) summary
    pfam05510
    Location:29 → 375
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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