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polr2i RNA polymerase II subunit I [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103377627, updated on 11-Mar-2024

Summary

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Gene symbol
polr2i
Gene description
RNA polymerase II subunit I
See related
Ensembl:ENSCSEG00000002213
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See polr2i in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 4 NC_024310.1 (1645004..1647105)

Chromosome 4 - NC_024310.1Genomic Context describing neighboring genes Neighboring gene dishevelled binding antagonist of beta catenin 3 Neighboring gene uncharacterized LOC103377629 Neighboring gene complement C5a receptor 1 Neighboring gene LBH regulator of WNT signaling pathway, like Neighboring gene peptidoglycan recognition protein 5 Neighboring gene forkhead box G1c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024310.1 Chromosome 4 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
polymerase (RNA) II subunit I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024310.1 Reference Cse_v1.0 Primary Assembly

    Range
    1645004..1647105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008308496.3 → XP_008306718.1  DNA-directed RNA polymerase II subunit RPB9

    UniProtKB/TrEMBL
    A0A3P8URP7
    Related
    ENSCSEP00000003376.1, ENSCSET00000003420.1
    Conserved Domains (3) summary
    smart00661
    Location:16 → 69
    RPOL9; RNA polymerase subunit 9
    COG1594
    Location:15 → 126
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:75 → 125
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
Heading Accession and Version

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