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sgcg sarcoglycan, gamma [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103377615, updated on 11-Mar-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
See related
Ensembl:ENSCSEG00000002326
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 4 NC_024310.1 (1719322..1733726)

Chromosome 4 - NC_024310.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene ribosomal protein S25 Neighboring gene sacsin molecular chaperone Neighboring gene ETS proto-oncogene 1, transcription factor Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024310.1 Chromosome 4 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024310.1 Reference Cse_v1.0 Primary Assembly

    Range
    1719322..1733726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008308484.3 → XP_008306706.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_008306706.1

    UniProtKB/TrEMBL
    A0A3P8UNX4
    Related
    ENSCSEP00000003538.1, ENSCSET00000003583.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025054974.1 → XP_024910742.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3P8UNX4
    Related
    ENSCSEP00000003554.1, ENSCSET00000003599.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_025054973.1 → XP_024910741.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3P8UNX4
    Related
    ENSCSEP00000003546.1, ENSCSET00000003591.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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