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prpf8 pre-mRNA processing factor 8 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103376048, updated on 11-Mar-2024

Summary

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Gene symbol
prpf8
Gene description
pre-mRNA processing factor 8
See related
Ensembl:ENSSPAG00000015639
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See prpf8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007581382.1 (30032..47655, complement)

NW_007581382.1Genomic Context describing neighboring genes Neighboring gene vitronectin a Neighboring gene scavenger receptor class F, member 1 Neighboring gene Rab interacting lysosomal protein Neighboring gene uncharacterized LOC103376049 Neighboring gene apoptosis-inducing factor 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007581382 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U1 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing-splicing factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007581382.1 Reference Stegastes_partitus-1.0.2

    Range
    30032..47655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008306397.1 → XP_008304619.1  pre-mRNA-processing-splicing factor 8

    UniProtKB/TrEMBL
    A0A3B5ASS1, A0A9Y4NW45
    Related
    ENSSPAP00000020819.1, ENSSPAT00000021135.1
    Conserved Domains (1) summary
    COG5178
    Location:30 → 2338
    PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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