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rpl11 ribosomal protein L11 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103365445, updated on 11-Mar-2024

Summary

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Gene symbol
rpl11
Gene description
ribosomal protein L11
See related
Ensembl:ENSSPAG00000001672
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See rpl11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578572.1 (59035..63054, complement)

NW_007578572.1Genomic Context describing neighboring genes Neighboring gene elongin A Neighboring gene kelch-like family member 43 Neighboring gene cyclic GMP-AMP synthase-like Neighboring gene elongation factor 1-alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578572 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578572.1 Reference Stegastes_partitus-1.0.2

    Range
    59035..63054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008292881.1 → XP_008291103.1  60S ribosomal protein L11

    See identical proteins and their annotated locations for XP_008291103.1

    UniProtKB/TrEMBL
    A0A3B4YZY0
    Related
    ENSSPAP00000002188.1, ENSSPAT00000002222.1
    Conserved Domains (1) summary
    PTZ00156
    Location:6 → 175
    PTZ00156; 60S ribosomal protein L11; Provisional
Nucleotide Protein
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