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LOC103339420 delta(12)-fatty-acid desaturase FAD2 [ Prunus mume (Japanese apricot) ]

Gene ID: 103339420, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103339420
Gene description
delta(12)-fatty-acid desaturase FAD2
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus mume
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC103339420 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
2
Annotation release Status Assembly LG Location
101 current P.mume_V1.0 (GCF_000346735.1) LG8 NC_024133.1 (6725909..6730020, complement)

Linkage Group LG8 - NC_024133.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 13, chloroplastic Neighboring gene VQ motif-containing protein 25 Neighboring gene 18 kDa seed maturation protein Neighboring gene zinc finger CCCH domain-containing protein 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024133.1 Chromosome LG8 Reference P.mume_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta(12)-fatty-acid desaturase FAD2
Names
omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.mume_V1.0 Primary Assembly

Genomic

  1. NC_024133.1 Reference P.mume_V1.0 Primary Assembly

    Range
    6725909..6730020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008242715.1 → XP_008240937.1  delta(12)-fatty-acid desaturase FAD2

    Conserved Domains (2) summary
    PLN02505
    Location:1 → 382
    PLN02505; omega-6 fatty acid desaturase
    COG3239
    Location:27 → 362
    DesA; Fatty acid desaturase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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