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NPL N-acetylneuraminate pyruvate lyase [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103276961, updated on 11-Mar-2024

Summary

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Gene symbol
NPL
Gene description
N-acetylneuraminate pyruvate lyase
See related
Ensembl:ENSTSYG00000007936
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See NPL in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007260523.1 (624759..659864)

NW_007260523.1Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 16 Neighboring gene regulator of G protein signaling 8 Neighboring gene protein BEX5-like Neighboring gene DExH-box helicase 9 Neighboring gene ribonuclease P protein subunit p21 pseudogene Neighboring gene SHC binding and spindle associated 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007260523 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007260523.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    624759..659864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008074410.2 → XP_008072601.1  N-acetylneuraminate lyase isoform X2

    UniProtKB/TrEMBL
    A0A1U7V302
    Conserved Domains (1) summary
    cl21457
    Location:8 → 266
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  2. XM_008074411.2 → XP_008072602.1  N-acetylneuraminate lyase isoform X3

    UniProtKB/TrEMBL
    A0A1U7V4H3
    Related
    ENSTSYP00000015090.1, ENSTSYT00000029225.1
    Conserved Domains (1) summary
    cl21457
    Location:8 → 209
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  3. XM_008074409.2 → XP_008072600.1  N-acetylneuraminate lyase isoform X1

    UniProtKB/TrEMBL
    A0A1U7UQV9
    Related
    ENSTSYP00000007259.1, ENSTSYT00000007921.2
    Conserved Domains (1) summary
    cd00954
    Location:8 → 306
    NAL; N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL)

  4. XM_021707206.1 → XP_021562881.1  N-acetylneuraminate lyase isoform X4

    UniProtKB/TrEMBL
    A0A3Q0DIZ4
    Related
    ENSTSYP00000020678.1, ENSTSYT00000037703.1
    Conserved Domains (1) summary
    cl28880
    Location:8 → 218
    Aldolase_Class_I; Class I aldolases
Nucleotide Protein
Heading Accession and Version

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