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LGALS1 galectin 1 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103269775, updated on 11-Mar-2024

Summary

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Gene symbol
LGALS1
Gene description
galectin 1
See related
Ensembl:ENSTSYG00000026908
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See LGALS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007253577.1 (84610..104361, complement)

NW_007253577.1Genomic Context describing neighboring genes Neighboring gene TRIO and F-actin binding protein Neighboring gene nucleolar protein 12 Neighboring gene SH3 domain binding protein 1 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007253577 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007253577.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    84610..104361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021717236.1 → XP_021572911.1  galectin-1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7UI50
    Conserved Domains (1) summary
    smart00276
    Location:11 → 135
    GLECT; Galectin

  2. XM_008067335.1 → XP_008065526.1  galectin-1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7UI50
    Related
    ENSTSYP00000028445.1, ENSTSYT00000039074.1
    Conserved Domains (1) summary
    smart00276
    Location:11 → 135
    GLECT; Galectin

  3. XM_021717237.1 → XP_021572912.1  galectin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0EDC0
    Conserved Domains (1) summary
    smart00276
    Location:11 → 128
    GLECT; Galectin

  4. XM_021717235.1 → XP_021572910.1  galectin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0EF42
    Conserved Domains (1) summary
    smart00276
    Location:13 → 137
    GLECT; Galectin
Nucleotide Protein
Heading Accession and Version

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