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PGD phosphogluconate dehydrogenase [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103267351, updated on 11-Mar-2024

Summary

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Gene symbol
PGD
Gene description
phosphogluconate dehydrogenase
See related
Ensembl:ENSTSYG00000007187
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See PGD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007252208.1 (268595..288676, complement)

NW_007252208.1Genomic Context describing neighboring genes Neighboring gene cortistatin-like Neighboring gene centromere protein S Neighboring gene DNA fragmentation factor subunit alpha Neighboring gene kinesin family member 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007252208 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphogluconate dehydrogenase, decarboxylating

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007252208.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    268595..288676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008064953.2 → XP_008063144.1  6-phosphogluconate dehydrogenase, decarboxylating isoform X1

    UniProtKB/TrEMBL
    A0A1U7TT18
    Related
    ENSTSYP00000018915.1, ENSTSYT00000040433.1
    Conserved Domains (3) summary
    PRK09287
    Location:1 → 457
    PRK09287; 6-phosphogluconate dehydrogenase; Validated
    pfam00393
    Location:167 → 456
    6PGD; 6-phosphogluconate dehydrogenase, C-terminal domain
    pfam03446
    Location:1 → 163
    NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase

  2. XM_008064954.2 → XP_008063145.1  6-phosphogluconate dehydrogenase, decarboxylating isoform X2

    UniProtKB/TrEMBL
    A0A1U7TZ85
    Conserved Domains (3) summary
    PRK09287
    Location:1 → 435
    PRK09287; 6-phosphogluconate dehydrogenase; Validated
    pfam00393
    Location:145 → 434
    6PGD; 6-phosphogluconate dehydrogenase, C-terminal domain
    pfam03446
    Location:1 → 141
    NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
Nucleotide Protein
Heading Accession and Version

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