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NDST1 N-deacetylase and N-sulfotransferase 1 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103266109, updated on 11-Mar-2024

Summary

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Gene symbol
NDST1
Gene description
N-deacetylase and N-sulfotransferase 1
See related
Ensembl:ENSTSYG00000010359
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See NDST1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007251116.1 (362037..400021, complement)

NW_007251116.1Genomic Context describing neighboring genes Neighboring gene myozenin 3 Neighboring gene synaptopodin Neighboring gene ribosomal protein S14 Neighboring gene CD74 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007251116 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007251116.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    362037..400021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008063751.2 → XP_008061942.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7U9J9
    Related
    ENSTSYP00000028041.1, ENSTSYT00000047598.1
    Conserved Domains (2) summary
    pfam00685
    Location:605 → 855
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_021715353.1 → XP_021571028.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0EAH5
    Related
    ENSTSYP00000025045.1, ENSTSYT00000025974.1
    Conserved Domains (2) summary
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:605 → 798
    Sulfotransfer_3; Sulfotransferase family

RNA

  1. XR_504682.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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