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ATRNL1 attractin like 1 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103265759, updated on 11-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
Ensembl:ENSTSYG00000029443
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007250930.1 (385776..469227)

NW_007250930.1Genomic Context describing neighboring genes Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene 28S ribosomal protein S36, mitochondrial-like Neighboring gene DNA mismatch repair protein Msh2 pseudogene Neighboring gene leucine rich repeat containing 38

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007250930 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007250930.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    385776..469227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008063409.1 → XP_008061600.1  attractin-like protein 1

    UniProtKB/TrEMBL
    A0A1U7TUU4
    Related
    ENSTSYP00000027052.1, ENSTSYT00000040941.1
    Conserved Domains (4) summary
    cd00041
    Location:98 → 213
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:310 → 357
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:357 → 397
    Kelch_5; Kelch motif
    cl19567
    Location:240 → 285
    DSL; Delta serrate ligand
Nucleotide Protein
Heading Accession and Version

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