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UMOD uromodulin [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103261142, updated on 11-Mar-2024

Summary

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Gene symbol
UMOD
Gene description
uromodulin
See related
Ensembl:ENSTSYG00000026781
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See UMOD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007247719.1 (566921..582470)

NW_007247719.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase medium chain family member 5 Neighboring gene protein disulfide isomerase like, testis expressed Neighboring gene glycoprotein 2 Neighboring gene G protein-coupled receptor 139

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007247719 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neutrophil migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uromodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007247719.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    566921..582470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008058759.1 → XP_008056950.1  uromodulin

    See identical proteins and their annotated locations for XP_008056950.1

    UniProtKB/TrEMBL
    A0A1U7TGI3
    Related
    ENSTSYP00000024151.1, ENSTSYT00000030327.1
    Conserved Domains (4) summary
    smart00179
    Location:109 → 150
    EGF_CA; Calcium-binding EGF-like domain
    smart00241
    Location:335 → 584
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:464 → 584
    Zona_pellucida; Zona pellucida-like domain
    pfam12947
    Location:36 → 64
    EGF_3; EGF domain

  2. XM_008058758.1 → XP_008056949.1  uromodulin

    See identical proteins and their annotated locations for XP_008056949.1

    UniProtKB/TrEMBL
    A0A1U7TGI3
    Related
    ENSTSYP00000026403.1, ENSTSYT00000038955.1
    Conserved Domains (4) summary
    smart00179
    Location:109 → 150
    EGF_CA; Calcium-binding EGF-like domain
    smart00241
    Location:335 → 584
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:464 → 584
    Zona_pellucida; Zona pellucida-like domain
    pfam12947
    Location:36 → 64
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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