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ABAT 4-aminobutyrate aminotransferase [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103260030, updated on 18-Sep-2024

Summary

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Gene symbol
ABAT
Gene description
4-aminobutyrate aminotransferase
See related
Ensembl:ENSTSYG00000025558
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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See ABAT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007247199.1 (57925..160105, complement)

NW_007247199.1Genomic Context describing neighboring genes Neighboring gene phosphomannomutase 2 Neighboring gene transmembrane protein 186 Neighboring gene methyltransferase 22, Kin17 lysine Neighboring gene transmembrane protein 114

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007247199 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gamma-aminobutyric acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-aminobutyrate aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007247199.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    57925..160105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021712137.1 → XP_021567812.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A1U7THH4
    Conserved Domains (1) summary
    TIGR00699
    Location:34 → 496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type

  2. XM_008057667.2 → XP_008055858.1  4-aminobutyrate aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A1U7THH4
    Related
    ENSTSYP00000031220.1, ENSTSYT00000030851.1
    Conserved Domains (1) summary
    TIGR00699
    Location:34 → 496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type

  3. XM_021712136.1 → XP_021567811.1  4-aminobutyrate aminotransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3Q0DX77
    Conserved Domains (1) summary
    TIGR00699
    Location:50 → 512
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type

  4. XM_021712138.1 → XP_021567813.1  4-aminobutyrate aminotransferase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A3Q0E1E7
    Conserved Domains (1) summary
    TIGR00699
    Location:1 → 438
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
Nucleotide Protein
Heading Accession and Version

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