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PKD1 polycystin 1, transient receptor potential channel interacting [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103252735, updated on 11-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
See related
Ensembl:ENSTSYG00000030438
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007113788.1 (7..55803, complement)

NW_007113788.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103252723 Neighboring gene RAB26, member RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007113788 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007113788.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    7..55803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021709257.1 → XP_021564932.1  LOW QUALITY PROTEIN: polycystin-1

    UniProtKB/TrEMBL
    A0A3Q0DR28
    Related
    ENSTSYP00000030812.1, ENSTSYT00000042228.1
    Conserved Domains (5) summary
    TIGR00864
    Location:47 → 2679
    PCC; polycystin cation channel protein
    smart00303
    Location:2958 → 3007
    GPS; G-protein-coupled receptor proteolytic site domain
    cd01752
    Location:3065 → 3184
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:21 → 42
    LRR_1; leucine-rich repeat [structural motif]
    cl27887
    Location:3655 → 3889
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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