U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103248949, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
EDEM2
Gene description
ER degradation enhancing alpha-mannosidase like protein 2
See related
Ensembl:ENSCSAG00000011816
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See EDEM2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666050.1 (87359738..87392953)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 2 NC_023643.1 (39417994..39452398, complement)

NW_023666050.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119618585 Neighboring gene protein C receptor Neighboring gene small nucleolar RNA SNORD56 Neighboring gene transient receptor potential cation channel subfamily C member 4 associated protein Neighboring gene myosin heavy chain 7B Neighboring gene glutathione synthetase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666050.1 Reference Vero_WHO_p1.0

    Range
    87359738..87392953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008021640.2 → XP_008019831.2  ER degradation-enhancing alpha-mannosidase-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A0D9RHC3
    Conserved Domains (1) summary
    pfam01532
    Location:37 → 443
    Glyco_hydro_47; Glycosyl hydrolase family 47

  2. XM_008021634.2 → XP_008019825.2  ER degradation-enhancing alpha-mannosidase-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RHC3
    Conserved Domains (1) summary
    pfam01532
    Location:42 → 480
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.