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CNTN5 contactin 5 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103248314, updated on 11-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
Ensembl:ENSCSAG00000003274
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666043.1 (34119947..35447665, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 1 NC_023642.1 (90912614..91742510)

NW_023666043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119626588 Neighboring gene small nucleolar RNA U13 Neighboring gene Rho GTPase activating protein 42 Neighboring gene progesterone receptor Neighboring gene replication protein A 32 kDa subunit-like Neighboring gene AP-2 complex subunit sigma Neighboring gene zinc finger protein 614-like Neighboring gene uncharacterized LOC119626590

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666043.1 Reference Vero_WHO_p1.0

    Range
    34119947..35447665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038004871.1 → XP_037860799.1  contactin-5

    UniProtKB/TrEMBL
    A0A0D9S1N5
    Conserved Domains (5) summary
    cd00063
    Location:671 → 768
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:300 → 305
    Ig; Ig strand A [structural motif]
    cd04969
    Location:480 → 568
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cd05848
    Location:98 → 193
    IgI_1_Contactin-5; First immunoglobulin (Ig) domain of contactin-5; member of the I-set of Ig superfamily domains
    cl11960
    Location:300 → 387
    Ig; Immunoglobulin domain

  2. XM_038004872.1 → XP_037860800.1  contactin-5

    UniProtKB/TrEMBL
    A0A0D9S1N5
    Conserved Domains (5) summary
    cd00063
    Location:671 → 768
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:300 → 305
    Ig; Ig strand A [structural motif]
    cd04969
    Location:480 → 568
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cd05848
    Location:98 → 193
    IgI_1_Contactin-5; First immunoglobulin (Ig) domain of contactin-5; member of the I-set of Ig superfamily domains
    cl11960
    Location:300 → 387
    Ig; Immunoglobulin domain
Nucleotide Protein
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