U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103246868, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
See related
Ensembl:ENSCSAG00000013433
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GPCPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666071.1 (11949561..12013632, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 2 NC_023643.1 (32522953..32585204)

NW_023666071.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103246889 Neighboring gene uncharacterized LOC119621457 Neighboring gene eukaryotic translation initiation factor 4E-like Neighboring gene shieldin complex subunit 1 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666071.1 Reference Vero_WHO_p1.0

    Range
    11949561..12013632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008018857.2 → XP_008017048.2  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RLU9
    Conserved Domains (2) summary
    cd05814
    Location:114 → 225
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:417 → 709
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  2. XM_008018866.2 → XP_008017057.2  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    UniProtKB/TrEMBL
    A0A0D9RLU9
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.