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TCFL5 transcription factor like 5 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103242977, updated on 11-Mar-2024

Summary

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Gene symbol
TCFL5
Gene description
transcription factor like 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See TCFL5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666050.1 (49194413..49238931)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 2 NC_023643.1 (1364343..1385111)

NW_023666050.1Genomic Context describing neighboring genes Neighboring gene death inducer-obliterator 1 Neighboring gene ADP-ribosylation factor 4-like Neighboring gene putative DPH3 homolog B Neighboring gene collagen type IX alpha 3 chain Neighboring gene opioid growth factor receptor Neighboring gene MRG domain binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor-like 5 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666050.1 Reference Vero_WHO_p1.0

    Range
    49194413..49238931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008011596.2 → XP_008009787.1  transcription factor-like 5 protein isoform X1

  2. XM_008011606.2 → XP_008009797.2  transcription factor-like 5 protein isoform X2

    Conserved Domains (1) summary
    cd18909
    Location:396 → 455
    bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

  3. XM_037982570.1 → XP_037838498.1  transcription factor-like 5 protein isoform X4

    Conserved Domains (1) summary
    cd18909
    Location:397 → 456
    bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

  4. XM_008011626.2 → XP_008009817.2  transcription factor-like 5 protein isoform X5

    Conserved Domains (1) summary
    cd18909
    Location:397 → 456
    bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins

  5. XM_037982569.1 → XP_037838497.1  transcription factor-like 5 protein isoform X3

    Conserved Domains (1) summary
    cd18909
    Location:397 → 456
    bHLH_TCFL5; basic helix-loop-helix (bHLH) domain found in transcription factor-like 5 protein (TCFL5) and similar proteins
Nucleotide Protein
Heading Accession and Version

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