U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HIF3A hypoxia inducible factor 3 subunit alpha [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103234903, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HIF3A
Gene description
hypoxia inducible factor 3 subunit alpha
See related
Ensembl:ENSCSAG00000003068
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HIF3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666073.1 (19350237..19397181)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 6 NC_023647.1 (39672580..39718944)

NW_023666073.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119621716 Neighboring gene insulin growth factor-like family member 1 Neighboring gene non-histone chromosomal protein HMG-17-like Neighboring gene U6 spliceosomal RNA Neighboring gene protein phosphatase 5 catalytic subunit Neighboring gene 60S ribosomal protein L18a-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hypoxia-inducible factor 3-alpha
Names
hypoxia inducible factor 3 alpha subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666073.1 Reference Vero_WHO_p1.0

    Range
    19350237..19397181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007997282.2 → XP_007995473.2  hypoxia-inducible factor 3-alpha isoform X2

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (4) summary
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 510
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:241 → 346
    PAS_11; PAS domain

  2. XM_037991864.1 → XP_037847792.1  hypoxia-inducible factor 3-alpha isoform X1

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (4) summary
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 510
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:241 → 346
    PAS_11; PAS domain

  3. XM_037991865.1 → XP_037847793.1  hypoxia-inducible factor 3-alpha isoform X1

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (4) summary
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 510
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:241 → 346
    PAS_11; PAS domain

  4. XM_037991863.1 → XP_037847791.1  hypoxia-inducible factor 3-alpha isoform X1

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (4) summary
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 510
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:241 → 346
    PAS_11; PAS domain

  5. XM_037991868.1 → XP_037847796.1  hypoxia-inducible factor 3-alpha isoform X3

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (3) summary
    cd00130
    Location:51 → 101
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam11413
    Location:411 → 441
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:172 → 277
    PAS_11; PAS domain

  6. XM_037991869.1 → XP_037847797.1  hypoxia-inducible factor 3-alpha isoform X5

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (4) summary
    cd00130
    Location:39 → 114
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam11413
    Location:424 → 454
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:185 → 290
    PAS_11; PAS domain
    cl00081
    Location:1 → 18
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  7. XM_007997288.2 → XP_007995479.2  hypoxia-inducible factor 3-alpha isoform X4

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (3) summary
    cd00130
    Location:51 → 101
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam11413
    Location:411 → 441
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:172 → 277
    PAS_11; PAS domain

  8. XM_037991867.1 → XP_037847795.1  hypoxia-inducible factor 3-alpha isoform X3

    UniProtKB/TrEMBL
    A0A0D9S285
    Conserved Domains (3) summary
    cd00130
    Location:51 → 101
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam11413
    Location:411 → 441
    HIF-1; Hypoxia-inducible factor-1
    pfam14598
    Location:172 → 277
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.