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ICAM5 intercellular adhesion molecule 5 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103233894, updated on 11-Mar-2024

Summary

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Gene symbol
ICAM5
Gene description
intercellular adhesion molecule 5
See related
Ensembl:ENSCSAG00000007342
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See ICAM5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666074.1 (10692764..10700078, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 6 NC_023647.1 (9341012..9348284)

NW_023666074.1Genomic Context describing neighboring genes Neighboring gene ferredoxin 2 Neighboring gene zinc finger GATA like protein 1 Neighboring gene intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) Neighboring gene intercellular adhesion molecule 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intercellular adhesion molecule 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666074.1 Reference Vero_WHO_p1.0

    Range
    10692764..10700078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007995220.2 → XP_007993411.1  intercellular adhesion molecule 5

    UniProtKB/TrEMBL
    A0A0D9R4R9
    Related
    ENSCSAP00000003608.1
    Conserved Domains (6) summary
    cd05755
    Location:120 → 219
    Ig2_ICAM-1_like; Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:761 → 821
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:759 → 831
    IG_like; Immunoglobulin like
    pfam03921
    Location:31 → 103
    ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
    pfam13895
    Location:325 → 404
    Ig_2; Immunoglobulin domain
    cl11960
    Location:512 → 570
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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