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PLD4 phospholipase D family member 4 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103229788, updated on 11-Mar-2024

Summary

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Gene symbol
PLD4
Gene description
phospholipase D family member 4
See related
Ensembl:ENSCSAG00000009675
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See PLD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666053.1 (70274769..70283752)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 24 NC_023665.1 (82848775..82857359)

NW_023666053.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 42 Neighboring gene centrosomal protein 170B Neighboring gene AHNAK nucleoprotein 2 Neighboring gene clathrin binding box of aftiphilin containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic progenitor cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exonuclease PLD4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666053.1 Reference Vero_WHO_p1.0

    Range
    70274769..70283752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007988013.2 → XP_007986204.1  5'-3' exonuclease PLD4 isoform X2

    UniProtKB/TrEMBL
    A0A0D9RBA6
    Related
    ENSCSAP00000005895.1
    Conserved Domains (3) summary
    cd09148
    Location:313 → 499
    PLDc_vPLD4_2; Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD4
    PHA02820
    Location:101 → 511
    PHA02820; phospholipase-D-like protein; Provisional
    cl15239
    Location:107 → 276
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  2. XM_007988014.2 → XP_007986205.1  5'-3' exonuclease PLD4 isoform X3

    UniProtKB/TrEMBL
    A0A0D9RBA6
    Conserved Domains (2) summary
    PHA02820
    Location:101 → 502
    PHA02820; phospholipase-D-like protein; Provisional
    cl15239
    Location:305 → 490
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  3. XM_007988010.2 → XP_007986201.1  5'-3' exonuclease PLD4 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RBA6
    Conserved Domains (3) summary
    cd09148
    Location:376 → 562
    PLDc_vPLD4_2; Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD4
    PHA02820
    Location:164 → 574
    PHA02820; phospholipase-D-like protein; Provisional
    cl15239
    Location:170 → 339
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
Nucleotide Protein
Heading Accession and Version

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