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GALC galactosylceramidase [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103229484, updated on 11-Mar-2024

Summary

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Gene symbol
GALC
Gene description
galactosylceramidase
See related
Ensembl:ENSCSAG00000011609
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See GALC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666053.1 (52874548..52988107, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 24 NC_023665.1 (65556763..65621693, complement)

NW_023666053.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119619069 Neighboring gene uncharacterized LOC119619070 Neighboring gene G protein-coupled receptor 65 Neighboring gene potassium two pore domain channel subfamily K member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactocerebrosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666053.1 Reference Vero_WHO_p1.0

    Range
    52874548..52988107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007987503.2 → XP_007985694.1  galactocerebrosidase isoform X1

    Conserved Domains (2) summary
    pfam02057
    Location:17 → 685
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:31 → 358
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  2. XM_007987504.2 → XP_007985695.1  galactocerebrosidase isoform X2

    UniProtKB/TrEMBL
    A0A0D9RGR7
    Related
    ENSCSAP00000007806.1
    Conserved Domains (2) summary
    pfam02057
    Location:7 → 626
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:79 → 299
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  3. XM_037984352.1 → XP_037840280.1  galactocerebrosidase isoform X3

    Conserved Domains (2) summary
    pfam02057
    Location:1 → 233
    Glyco_hydro_59; Glycosyl hydrolase family 59
    pfam17387
    Location:241 → 348
    Glyco_hydro_59M; Glycosyl hydrolase family 59 central domain

RNA

  1. XR_005235447.1 RNA Sequence

  2. XR_005235446.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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