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EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103227949, updated on 11-Mar-2024

Summary

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Gene symbol
EDEM1
Gene description
ER degradation enhancing alpha-mannosidase like protein 1
See related
Ensembl:ENSCSAG00000010870
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See EDEM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666041.1 (125336058..125368550, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 22 NC_023663.1 (41253861..41286185)

NW_023666041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119625867 Neighboring gene dipeptidyl peptidase 3-like Neighboring gene eukaryotic translation initiation factor 4E-binding protein 1-like Neighboring gene nucleolar transcription factor 1-like Neighboring gene ARF like GTPase 8B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666041.1 Reference Vero_WHO_p1.0

    Range
    125336058..125368550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007985076.2 → XP_007983267.1  ER degradation-enhancing alpha-mannosidase-like protein 1

    UniProtKB/TrEMBL
    A0A0D9REK5
    Related
    ENSCSAP00000007044.1
    Conserved Domains (1) summary
    pfam01532
    Location:137 → 582
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
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