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CNTN6 contactin 6 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103227920, updated on 11-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
See related
Ensembl:ENSCSAG00000011221
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666041.1 (129207778..129514375, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 22 NC_023663.1 (37212995..37518060)

NW_023666041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103227928 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene contactin 4 Neighboring gene cell adhesion molecule L1 like Neighboring gene magnesium transporter NIPA2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666041.1 Reference Vero_WHO_p1.0

    Range
    129207778..129514375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007985017.2 → XP_007983208.2  contactin-6

    UniProtKB/TrEMBL
    A0A0D9RFE4
    Conserved Domains (4) summary
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:507 → 512
    Ig; Ig strand A' [structural motif]
    cd04969
    Location:408 → 496
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:500 → 598
    Ig; Immunoglobulin domain

  2. XM_007985018.2 → XP_007983209.2  contactin-6

    UniProtKB/TrEMBL
    A0A0D9RFE4
    Conserved Domains (4) summary
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:507 → 512
    Ig; Ig strand A' [structural motif]
    cd04969
    Location:408 → 496
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:500 → 598
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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