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PLA2G6 phospholipase A2 group VI [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103223308, updated on 11-Mar-2024

Summary

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Gene symbol
PLA2G6
Gene description
phospholipase A2 group VI
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See PLA2G6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666045.1 (104880026..104951884)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 19 NC_023660.1 (20818575..20884243, complement)

NW_023666045.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 184B Neighboring gene MAF bZIP transcription factor F Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2 Neighboring gene solute carrier family 16 member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-independent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiolipin acyl-chain remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
85/88 kDa calcium-independent phospholipase A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666045.1 Reference Vero_WHO_p1.0

    Range
    104880026..104951884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038007448.1 → XP_037863376.1  85/88 kDa calcium-independent phospholipase A2 isoform X1

    Conserved Domains (4) summary
    cd07212
    Location:480 → 793
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:286 → 314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:156 → 249
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:222 → 403
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_038007450.1 → XP_037863378.1  85/88 kDa calcium-independent phospholipase A2 isoform X2

    Conserved Domains (4) summary
    cd07212
    Location:426 → 739
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:286 → 314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:291 → 380
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:103 → 183
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_038007447.1 → XP_037863375.1  85/88 kDa calcium-independent phospholipase A2 isoform X1

    Conserved Domains (4) summary
    cd07212
    Location:480 → 793
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:286 → 314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:156 → 249
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:222 → 403
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_038007449.1 → XP_037863377.1  85/88 kDa calcium-independent phospholipase A2 isoform X2

    Conserved Domains (4) summary
    cd07212
    Location:426 → 739
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:286 → 314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:291 → 380
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:103 → 183
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_038007451.1 → XP_037863379.1  85/88 kDa calcium-independent phospholipase A2 isoform X3

    Conserved Domains (4) summary
    sd00045
    Location:286 → 314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:156 → 249
    Ank_2; Ankyrin repeats (3 copies)
    cl11396
    Location:480 → 626
    Patatin_and_cPLA2; Patatins and Phospholipases
    cl39094
    Location:222 → 403
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_038007452.1 → XP_037863380.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

    Conserved Domains (4) summary
    cd07212
    Location:246 → 559
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    PHA03095
    Location:2 → 182
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:52 → 80
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:57 → 146
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_038007453.1 → XP_037863381.1  85/88 kDa calcium-independent phospholipase A2 isoform X5

    Conserved Domains (4) summary
    cd07212
    Location:254 → 567
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    PTZ00322
    Location:109 → 218
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    sd00045
    Location:60 → 88
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:65 → 154
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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