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COLEC12 collectin subfamily member 12 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103222674, updated on 11-Mar-2024

Summary

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Gene symbol
COLEC12
Gene description
collectin subfamily member 12
See related
Ensembl:ENSCSAG00000017628
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See COLEC12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666050.1 (34490498..34675112, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 18 NC_023659.1 (59701131..59884445, complement)

NW_023666050.1Genomic Context describing neighboring genes Neighboring gene Rho associated coiled-coil containing protein kinase 1 Neighboring gene ubiquitin specific peptidase 14 Neighboring gene THO complex 1 Neighboring gene centrin 1 Neighboring gene clusterin like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pattern recognition receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666050.1 Reference Vero_WHO_p1.0

    Range
    34490498..34675112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037982459.1 → XP_037838387.1  collectin-12 isoform X3

    Conserved Domains (2) summary
    cd03590
    Location:543 → 668
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:13 → 286
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_007974490.2 → XP_007972681.1  collectin-12 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RYG4
    Related
    ENSCSAP00000013653.1
    Conserved Domains (3) summary
    cd03590
    Location:607 → 732
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam05714
    Location:66 → 188
    Borrelia_lipo_1; Borrelia burgdorferi virulent strain associated lipoprotein
    cl02193
    Location:157 → 317
    VirB5_like; VirB5 protein family

  3. XM_007974491.2 → XP_007972682.1  collectin-12 isoform X2

    Conserved Domains (3) summary
    cd03590
    Location:592 → 717
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam05714
    Location:51 → 173
    Borrelia_lipo_1; Borrelia burgdorferi virulent strain associated lipoprotein
    cl02193
    Location:142 → 302
    VirB5_like; VirB5 protein family
Nucleotide Protein
Heading Accession and Version

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