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DDX11 DEAD/H-box helicase 11 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103218547, updated on 11-Mar-2024

Summary

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Gene symbol
DDX11
Gene description
DEAD/H-box helicase 11
See related
Ensembl:ENSCSAG00000009442
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See DDX11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666089.1 (1363928..1395863)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 11 NC_023652.1 (9260206..9290308)

NW_023666089.1Genomic Context describing neighboring genes Neighboring gene pregnancy zone protein-like Neighboring gene 40S ribosomal protein S17-like Neighboring gene ovostatin-like Neighboring gene ran-binding protein 6-like Neighboring gene uncharacterized LOC119622677 Neighboring gene ovostatin homolog 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent DNA helicase DDX11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666089.1 Reference Vero_WHO_p1.0

    Range
    1363928..1395863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037995146.1 → XP_037851074.1  ATP-dependent DNA helicase DDX11 isoform X2

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:66 → 340
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:226 → 893
    rad3; DNA repair helicase (rad3)

  2. XM_037995148.1 → XP_037851076.1  ATP-dependent DNA helicase DDX11 isoform X4

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:40 → 314
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:200 → 867
    rad3; DNA repair helicase (rad3)

  3. XM_007967549.2 → XP_007965740.2  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:70 → 344
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:230 → 897
    rad3; DNA repair helicase (rad3)

  4. XM_007967551.2 → XP_007965742.2  ATP-dependent DNA helicase DDX11 isoform X3

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:70 → 344
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:230 → 897
    rad3; DNA repair helicase (rad3)

  5. XM_007967552.2 → XP_007965743.2  ATP-dependent DNA helicase DDX11 isoform X5

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:70 → 344
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:230 → 884
    rad3; DNA repair helicase (rad3)

  6. XM_037995147.1 → XP_037851075.1  ATP-dependent DNA helicase DDX11 isoform X4

    UniProtKB/TrEMBL
    A0A0D9RAP8
    Conserved Domains (2) summary
    PTZ00121
    Location:40 → 314
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:200 → 867
    rad3; DNA repair helicase (rad3)
Nucleotide Protein
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