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TGDS TDP-glucose 4,6-dehydratase [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103214665, updated on 11-Mar-2024

Summary

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Gene symbol
TGDS
Gene description
TDP-glucose 4,6-dehydratase
See related
Ensembl:ENSCSAG00000017539
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See TGDS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666046.1 (29788007..29814614, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 3 NC_023644.1 (73403520..73424985, complement)

NW_023666046.1Genomic Context describing neighboring genes Neighboring gene dopachrome tautomerase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like Neighboring gene G protein-coupled receptor 180 Neighboring gene SRY-box transcription factor 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666046.1 Reference Vero_WHO_p1.0

    Range
    29788007..29814614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038007807.1 → XP_037863735.1  dTDP-D-glucose 4,6-dehydratase isoform X3

    Conserved Domains (1) summary
    cd05246
    Location:18 → 327
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  2. XM_007960689.2 → XP_007958880.1  dTDP-D-glucose 4,6-dehydratase isoform X2

    See identical proteins and their annotated locations for XP_007958880.1

    UniProtKB/TrEMBL
    A0A0D9RY78
    Related
    ENSCSAP00000013567.1
    Conserved Domains (1) summary
    cd05246
    Location:18 → 336
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  3. XM_038007806.1 → XP_037863734.1  dTDP-D-glucose 4,6-dehydratase isoform X1

    Conserved Domains (1) summary
    cd05246
    Location:18 → 327
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  4. XM_007960690.2 → XP_007958881.2  dTDP-D-glucose 4,6-dehydratase isoform X4

    Conserved Domains (1) summary
    cd05246
    Location:1 → 295
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
Nucleotide Protein
Heading Accession and Version

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